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| 1 | Transcriptome reprogramming,epigenetic modifications and alternative splicing orchestrate the tomato root response to the beneficial fungus Trichoderma harzianum显示文摘Beneficial interactions of rhizosphere microorganisms are widely exploited for plant biofertilization and mitigation of biotic and abiotic constraints.To provide new insights into the onset of the roots–beneficial microorganisms interplay,we characterised the transcriptomes expressed in tomato roots at 24,48 and 72 h post inoculation with the beneficial fungus Trichoderma harzianum T22 and analysed the epigenetic and post-trascriptional regulation mechanisms.We detected 1243 tomato transcripts that were differentially expressed between Trichoderma-interacting and control roots and 83 T.harzianum transcripts that were differentially expressed between the three experimental time points.Interaction with Trichoderma triggered a transcriptional response mainly ascribable to signal recognition and transduction,stress response,transcriptional regulation and transport.In tomato roots,salicylic acid,and not jasmonate,appears to have a prominent role in orchestrating the interplay with this beneficial strain.Differential regulation of many nutrient transporter genes indicated a strong effect on plant nutrition processes,which,together with the possible modifications in root architecture triggered by ethylene/indole-3-acetic acid signalling at 72 h post inoculation may concur to the well-described growth-promotion ability of this strain.Alongside,T.harzianum-induced defence priming and stress tolerance may be mediated by the induction of reactive oxygen species,detoxification and defence genes.A deeper insight into gene expression and regulation control provided first evidences for the involvement of cytosine methylation and alternative splicing mechanisms in the plant–Trichoderma interaction.A model is proposed that integrates the plant transcriptomic responses in the roots,where interaction between the plant and beneficial rhizosphere microorganisms occurs. | Monica De Palma Maria Salzano Clizia Villano Riccardo Aversano Matteo Lorito Michelina Ruocco Teresa Docimo Anna Lisa Piccinelli Nunzio D’Agostino Marina Tucci | 2019 | Horticulture Research2019，6，1： | 2 |
| 2 | Eedyste- roids from the Caribbean sponge Iotrochota birotulata 显示文摘 | Costantino V Aversano C D Fattorusso E | 2000 | Steroids2000，65，： | 1 |
| 3 | Analysis of cyanobacterial toxins by hydrophilic interaction liquid chromatography-massspectrometry显示文摘 | Aversano D Eaglesham C Quilliam G K | 2004 | J Chromatogr A2004，1028，： | 1 |
| 4 | Selective enhancement of function of stunned myocardium by increased flow显示文摘 | STAHL L D AVERSANO T R BECHER L C | 1986 | Circulation1986，74，： | 1 |
| 5 | TomatEST database: in silico exploitation of EST data to explore expression patterns in tomato species显示文摘 | D'AGOSTINO N AVERSANO M FRUSCIANTE L CHIUSANO M L | 2007 | Nucleic Acids Research2007，35，： | 1 |
| 6 | Hydrophilicinteraction liquid chromatography-mass spectrometry forthe analysis of paralytic shellfish poisoning toxins 显示文摘 | Aversano C D Hess P Quilliam M A | 2005 | Journal of Chromatography A2005，，1081： | 1 |
| 7 | Stochastic changes affect Solanum wild species following autopolyploidization显示文摘 | Aversano R Caruso I Aronne G Mieco V D Scognamiglio N Carputo D | 2013 | Journal of Experimental Botany2013，64，2： | 1 |
| 8 | ParPEST: a pipeline for EST data analysis based on parallel computing显示文摘 | Nunzio D'Agostino Mario Aversano | 2005 | BMC Bioinformatics2005，，： | 1 |
| 9 | Analysis of cyanobacterial toxins byhydrophilic interaction liquid chromatography-mass spectrometry显示文摘 | AVERSANO C D EAGLESHAM G K QUILLIAM M A | | 0，，28： | 1 |
| 10 | Analysis of cyanobacterial toxins by hydrophilic interaction liquid chromatography-mass spectrometry 显示文摘 | AVERSANO C D EAGLESHAM G K QUILLIAM M A | 2004 | Journal of Chromatography A2004，1028，1： | 1 |
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