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| 1 | Cryptic diversity and significant cophylogenetic signal detected by DNA barcoding the rust fungi (Pucciniaceae) of Cyperaceae-Juncaceae显示文摘Plants play important roles as habitat and food for a tremendous diversity of specialist animals and fungi.The disappearance of any plant species can lead to extinction cascades of its associated biota.In consequence,documenting the diversity and specificity of plant-associated organisms is of high practical relevance in biodiversity conservation.Here,we present the first large-scale molecular investigation into the diversity,host specificity,and cophylogenetic congruence of an especially rich plant-fungal association,the rust fungi(Pucciniaceae)of Cyperaceae and Juncaceae.Using the largest rust fungi DNA barcoding dataset published to date(252 sequences,82 taxa),we reject the presence of a global ITS2-28S barcode gap,but find a local gap in Cyperaceae-Juncaceae rusts,and suggest the existence of many cryptic species in North America,with some broadly circumscribed species possibly corresponding to>10 cryptic species.We test previous hypotheses of correlations between the phylogenies of rust fungi and their Cyperaceae-Juncaceae hosts using a combination of global-fit and event-based cophylogenetic methods.A significant cophylogenetic signal is detected between rusts and their hosts,but the small number of cospeciations argues for preferential host jumps as the driving process behind these correlations.In addition,temporal congruence between the origin of major Carex clades and their rusts suggests that host diversification may have promoted parasite diversification.Finally,we discuss the relevance of rust infection patterns to the systematics of Cyperaceae,highlight some taxonomic problems uncovered by the analyses,and call attention to the promise of DNA barcoding for bridging knowledge gaps in poorly studied plant-associated microorganisms. | Étienne Léveillé-Bourret Quinn Eggertson Sarah Hambleton Julian R.Starr | 2021 | Journal of Systematics and Evolution2021,59,4: | 4 |
| 2 | California Simulation of Evapotranspiration of Applied Water and Agricultural Energy Use in California显示文摘The California Simulation of Evapotranspiration of Applied Water (Cal-SIMETAW) model is a new tool developed by the California Department of Water Resources and the University of California, Davis to perform daily soil water balance and determine crop evapotranspiration (ET c ), evapotranspiration of applied water (ET aw ), and applied water (AW) for use in California water resources planning. ET aw is a seasonal estimate of the water needed to irrigate a crop assuming 100% irrigation efficiency. The model accounts for soils, crop coefficients, rooting depths, seepage, etc. that influence crop water balance. It provides spatial soil and climate information and it uses historical crop and land-use category information to provide seasonal water balance estimates by combinations of detailed analysis unit and county (DAU/County) over California. The result is a large data base of ET c and ET aw that will be used to update information in the new California Water Plan (CWP). The application uses the daily climate data, i.e., maximum (T x ) and minimum (T n ) temperature and precipitation (P cp ), which were derived from monthly USDA-NRCS PRISM data (PRISM Group 2011) and daily US National Climate Data Center (NCDC) climate station data to cover California on a 4 km×4 km change grid spacing. The application uses daily weather data to determine reference evapotranspiration (ET o ), using the Hargreaves-Samani (HS) equation (Hargreaves and Samani 1982, 1985). Because the HS equation is based on temperature only, ET o from the HS equation were compared with CIMIS ET o at the same locations using available CIMIS data to determine correction factors to estimate CIMIS ET o from the HS ET o to account for spatial climate differences. Cal-SIMETAW also employs near real-time reference evapotranspiration (ET o ) information from Spatial CIMIS, which is a model that combines weather station data and remote sensing to provide a grid of ET o information. A second database containing the available soil water holding capacity and soil depth information for all of California was also developed from the USDA-NRCS SSURGO database. The Cal-SIMETAW program also has the ability to generate daily weather data from monthly mean values for use in studying climate change scenarios and their possible impacts on water demand in the state. The key objective of this project is to improve the accuracy of water use estimates for the California Water Plan (CWP), which provides a comprehensive report on water supply, demand, and management in California. In this paper, we will discuss the model and how it determines ET aw for use in water resources planning. | Morteza N Orang Richard L Snyder Shu Geng Quinn J Hart Sara Sarreshteh Matthias Falk Dylan Beaudette Scott Hayes Simon Eching | 2013 | Journal of Integrative Agriculture2013,12,8: | 3 |
| 3 | Solid-state reaction between titanium carbide and titanium metal 显示文摘 | Quinn C J Kohlstedt D L | 1984 | J Am Ceram Soc1984,67,5: | 2 |
| 4 | Soil productivity of four land use systems in southeast Montana显示文摘 | MeConnell S G L Quinn | 1988 | Journal of Soil Sciences Society1988,52,: | 1 |
| 5 | Tributyltin in environmental samples from the Former Derecktor Shipyard, Coddington Cove, Newport RI显示文摘 | Wade T L Sweet S T Quinn J G Cairns R W King J W | 2004 | Environmental Pollution2004,129,2: | 1 |
| 6 | Homeodomain protein HLX is expressed primarily in cytotrophoblast cell types in the early pregnancy human placenta 显示文摘 | Rajaraman G Murthi P Quinn L | 2008 | Reprod Fertil Dev2008,20,: | 1 |
| 7 | Void growth simulations in single crystals显示文摘 | O'Regan T L Quinn D F Howe M A MeHugh P E | 1997 | Computational Mechanies1997,20,: | 1 |
| 8 | 显示文摘 | Brown R Quinn Andrew Mount Karen J L Burg | 2005 | Journal of Biomedical Materials Research Part A2005,74,1: | 1 |
| 9 | pH-responsive poly(a- crylic acid) core cross-linked star polymers= Morphology transitions in solution and multilayer thin films显示文摘 | Connal L A Li Q Quinn J F | 2008 | Macro- molecules2008,41,7: | 1 |
| 10 | APRIL promotes cell-cycle progression in primary multiple myeloma cells:influence of D-type cyclin group and translocation status显示文摘 | Quinn J Glassford J Percy L | 2011 | Blood2011,117,: | 1 |
| 11 | Placenta accreta postpartum 显示文摘 | Ryan G L Quinn T J Syrop C H | 2002 | Obstet Gynecol2002,100,11: | 1 |
| 12 | Estrogen-induced activa- tion of Erk-1 and Erk-2 requires the G protein-coupled receptor homo- log, GPR30, and occurs via trans-activation of the epidermal growth factor receptor through release of HB-EGF 显示文摘 | Filardo E J Quinn J A Bland K l | 2000 | Mol Endocrinol2000,14,10: | 1 |
| 13 | Respiratory Development and Respiratory Distress Syndrome显示文摘 | RUBARTH L B QUINN J | 2015 | Neonatal Netw2015,34,4: | 1 |
| 14 | A trio of microRNAs that control Toll-like receptor signalling显示文摘 | QUINN S R O'NEILL L A | 2011 | Int Immunol2011,23,7: | 1 |
| 15 | Correlation of aromatase and cyclooxygenase gene expression in human breast cancer specimens 显示文摘 | BRUEGGEMEIER R W QUINN A L PARRETT M L | 1999 | Cancer Lett1999,140,1: | 1 |
| 16 | Modelling and managing critical source areas of diffuse pollution from agricultural land using flow connectivity simulation 显示文摘 | Heathwaite A L Quinn P F Hewett C J M | 2005 | Journal of Hydrology2005,,304: | 1 |
| 17 | Trans - forming gowth factor - beta induces development of the T (H) 17 lineage 显示文摘 | Mangan P R Harrington L E O Quinn D B | 2006 | Nature2006,441,7090: | 1 |
| 18 | Genetic basis for in vivo daptomycin resistance in enterococci显示文摘 | Arias CA Panesso D McGrath DM Qin X Mojica MF Miller C Diaz L Tran TT Rincon S Barbu EM Reyes J Roh JH Lobos E Sodergren E Pasqualini R Arap W Quinn JP Shamoo Y Murray BE Weinstock GM | | 0,,: | 1 |
| 19 | Transforming growth factor-beta induces development of the T(H)17 lineage显示文摘 | Mangan P R Harrington L E O'quinn D B | 2006 | Nature2006,441,7090: | 1 |
| 20 | Mechanisms in the development of type 2 diabetes Mellitus显示文摘 | QUINN L | 2002 | J Cardiovasc Nurs2002,16,: | 1 |