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| 1 | The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding显示文摘Grapevine is one of the most economically important crops worldwide.However,the previous versions of the grapevine reference genome tipically consist of thousands of fragments with missing centromeres and telomeres,limiting the accessibility of the repetitive sequences,the centromeric and telomeric regions,and the study of inheritance of important agronomic traits in these regions.Here,we assembled a telomere-to-telomere(T2T)gap-free reference genome for the cultivar PN40024 using PacBio HiFi long reads.The T2T reference genome(PN_T2T)is 69 Mb longer with 9018 more genes identified than the 12X.v0 version.We annotated 67%repetitive sequences,19 centromeres and 36 telomeres,and incorporated gene annotations of previous versions into the PN_T2T assembly.We detected a total of 377 gene clusters,which showed associations with complex traits,such as aroma and disease resistance.Even though PN40024 derives from nine generations of selfing,we still found nine genomic hotspots of heterozygous sites associated with biological processes,such as the oxidation–reduction process and protein phosphorylation.The fully annotated complete reference genome therefore constitutes an important resource for grapevine genetic studies and breeding programs. | Xiaoya Shi Shuo Cao Xu Wang Siyang Huang Yue Wang Zhongjie Liu Wenwen Liu Xiangpeng Leng Yanling Peng Nan Wang Yiwen Wang Zhiyao Ma Xiaodong Xu Fan Zhang Hui Xue Haixia Zhong Yi Wang Kekun Zhang Amandine Velt Komlan Avia Daniela Holtgräwe Jérôme Grimplet JoséTomás Matus Doreen Ware Xinyu Wu Haibo Wang Chonghuai Liu Yuling Fang Camille Rustenholz Zongming Cheng Hua Xiao Yongfeng Zhou | 2023 | Horticulture Research2023，10，5： | 3 |
| 2 | Tissue-specific mRNA expression profiling in grape berry tissues显示文摘 | GRIMPLET J DELUC L G TILLETT R L WHEATLEY M D SCHLAUCH K A CRAMER G R CUSHMAN J C | 2007 | BMC Genomics2007，8，： | 1 |
| 3 | Transcript profiling in Vitis ri- paria during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break显示文摘 | MATHIASON K HE D GRIMPLET J VENKATESWARI J GAL- BRAITH D OR E FENNELL A | 2009 | Functional & Integrative Genomics2009，9，1： | 1 |
| 4 | Differential floral development and gene expression in grapevines during long and short photoperiods suggests a role for floral genes in dormancy transitioning显示文摘 | Lekha Sreekantan Kathy Mathiason Jér?me Grimplet Karen Schlauch Julie A. Dickerson Anne Y. Fennell | 2010 | Plant Molecular Biology2010，，1： | 1 |
| 5 | Proteomic andselected metabolite analysis of grape berry tissues under wellwateredand water- deficit stress conditions 显示文摘 | Grimplet J Wheatley M D Jouira H B | 2009 | Proteomics2009，9，9： | 1 |
| 6 | Transcrip- tomic study of apricot fruit (Prunus armeniaca) ripening among 13006 expressed sequence tags显示文摘 | GRIMPLET J ROMIEU C AUDERGON J M MARTY I ALBAGNAC G LAMBERT P BOUCHET J P TERRIER N | 2005 | Physiologia Plantarum2005，125，： | 1 |
| 7 | Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordi nation of gene expression patterns with optimized bud break显示文摘 | MATHIASON K HE D GRIMPLET J etal | 2009 | Funct Integr Genomics2009，9，： | 1 |
| 8 | Water and salinity stress ingrapevines: early and late changes in transcript and metaboliteprofiles 显示文摘 | Cramer G R Ergül A Grimplet J | 2007 | Functional and Integrative Genomics2007，7，2： | 1 |
| 9 | Transcriptomie and metabolite analyses of Cabernet Sauvignon grape berry devel- opment 显示文摘 | Deluc L G Grimplet J Wheatley M D | 2007 | BMC Genomics2007，8，： | 1 |
| 10 | Proteomic and selected metabolite analysis of grapeberry tissues under well-watered and water-deficit stress conditions显示文摘 | GRIMPLET J WHEATLEY M D JOUIRA H B DELUC L G CRAMER G R CUSHMAN J C | 2009 | Proteomics2009，9，9： | 1 |
| 11 | Isogene specific oligo arrays reveal multifaceted changes in gene expression during grape berry (Vitis vinifera L.) development显示文摘 | Nancy Terrier David Glissant Jér?me Grimplet Fran?ois Barrieu Philippe Abbal Carole Couture Agnès Ageorges Rossitza Atanassova Céline Léon Jean-Pierre Renaudin Fabienne Dédaldéchamp Charles Romieu Serge Delrot Sa?d Hamdi | 2005 | Planta2005，，5： | 1 |
| 12 | Differential floral development and gene expression in grapevines during long and short photoperiods suggests a role for floral genes in dormancy transitioning显示文摘 | Sreekantan L Mathiason K Grimplet J | 2010 | Plant Molecular Biology2010，73，： | 1 |
| 13 | Transcriptomicand metabolite analyses of Cabernet Sauvignon grape berrydevelopment 显示文摘 | Deluc L G Grimplet J Wheatley M D | 2007 | BMC Genomics2007，8，： | 1 |
| 14 | Water and salinity stress in grapevines:early and late changes in transcript and metabolite pro-files显示文摘 | CRAMER G R ERGUL A GRIMPLET J TILLETT R L TAT-TERSALL E A BOHLMAN M C VINCENT D SONDEREGGER J EVANS J OSBORNE C QUILICI D SCHLAUCH K A SCHOOLEY D A CUSHMAN J C | 2007 | Funct Integr Genomics2007，7，： | 1 |
| 15 | Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development显示文摘 | DELUC L G GRIMPLET J WHEATLEY M D TILLETT R L QUILICI D R OSBORNE C SCHOOLEY D A SCHLAUCH K A CUSHMAN J C CRAMER G R | 2007 | BMC Genomics2007，8，1： | 1 |
| 16 | Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development显示文摘 | DELUC L GRIMPLET J WHEATLEY M | 2007 | BMC Genomics2007，8，1： | 1 |
| 17 | Water and salinity stress in grapevines: Early and late changes in transcript and metabolite profiles 显示文摘 | Cramer G R Ergul A Grimplet J | 2007 | Functional and Integrative Genomics2007，7，2： | 1 |
| 18 | Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles 显示文摘 | Cramer GR Ergul J Grimplet J | 2007 | Functional and Integrative Genomies2007，7，2： | 1 |
| 19 | Tissue-specific mRNA expression profiling in grape berry tissues显示文摘 | GRIMPLET J DELUC LG TILLETT R L WHEATLEY M D SCHLAUCH K A CRAMER G R CUSHMAN J C | 2007 | BMC Genomics2007，8，： | 1 |
| 20 | Differential floral develop- ment and gene expression in grapevines during long and short pho- toperiods suggests a role for floral genes in dormancy transitioning显示文摘 | SREEKANTAN L MATHIASON K GRIMPLET J SCHLAUCH K DICKERSON J A FENNELL A Y | 2010 | Plant Mol Biol2010，73，12： | 1 |
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